Archive

2025  2

February  2

Protein protonation tools and a simple case study how to use them for MD structure preparation with GROMACS

February 18, 2025 · 7 min · 1420 words · Muhammad Radifar

Protonation state determination of amino acid residues in Molecular Modeling and Molecular Simulation

February 14, 2025 · 7 min · 1420 words · Muhammad Radifar

2023  1

May  1

Lets Create A Domain-Specific Language for Molecular Interaction Analysis!

May 5, 2023 · 8 min · 1561 words · Muhammad Radifar

2022  1

July  1

Learn Open Babel in Python - 00 Setup

July 16, 2022 · 3 min · 467 words · Muhammad Radifar

2020  2

September  1

The Story Behind PyPLIF HIPPOS (Part 1)

September 12, 2020 · 6 min · 1069 words · Muhammad Radifar

August  1

Installing Open Babel with Pip

August 26, 2020 · 4 min · 665 words · Muhammad Radifar